| COMMANDANTS | DATE OF SERVICE |
| COMMO GERONIMO M CABAL AFP | 10 OCT 1967 – 30 NOV 1968 |
| COMMO DIOSCORO E PAPA AFP | 30 NOV 1968 – 31 MAR 1970 |
| COMMO LEOVIGILDO L GANTIOQUI AFP | 31 MAR 1970 – 14 JUL 1971 |
| CAPT GIL S FERNANDEZ PN (MNSA) | 14 JUL 71 – 20 SEP 72 |
| COMMO ERNESTO R OGBINAR AFP | 20 SEP 1972 – 27 MAR 1976 |
| COMMO SIMEON M ALEJANDRO AFP | 27 MAR 1976 – 01 AUG 1980 |
| COMMO BRILLANTE C OCHOCO AFP | 01 AUG 1980 – 09 DEC 1985 |
| COMMO LIBERTAD L LAZO AFP | 09 DEC 1985 – 26 FEB 1986 |
| COMMO CARLITO Y CUNANAN AFP | 26 FEB 1986 – 29 MAR 1988 |
| COMMO PIO H GARRIDO AFP | 29 MAR 1988 – 10 APR 1990 |
| CAPT RODOLFO J SIMON PN (MNSA) | 10 APR 1990 – 17 APR 1990 (OIC) |
| COMMO CARLOS L AGUSTIN AFP | 17 APR 1990 – 02 DEC 1993 |
| COMMO DARIO T FAJARDO AFP | 02 DEC 1993 – 17 OCT 1994 |
| COMMO ARTURO Y CAPADA AFP | 17 OCT 1994 – 08 SEP 1997 |
| CAPT JULITO M CASILLAN II PN (GSC) | 08 SEP 1997 – 10 OCT 1997 (OIC) |
| RADM MANUEL I DE LEON AFP | 10 OCT 1997 – 01 JUN 1998 |
| VADM EUCEO E FAJARDO PCG | 01 JUN 1998 – 09 FEB 2001 |
| VADM REUBEN S LISTA PCG | 09 FEB 2001 – 04 NOV 2003 |
| VADM ARTHUR N GOSINGAN PCG | 04 NOV 2003 – 09 NOV 2006 |
| ADM DAMIAN L CARLOS PCG | 09 NOV 2006 – 27 SEP 2007 |
| ADM DANILO A ABINOJA PCG | 27 SEP 2007 – 31 MAY 2008 |
| ADM WILFREDO D TAMAYO PCG | 31 MAY 2008 – 19 APR 2011 |
| VADM RAMON C LIWAG PCG | 19 APR 2011 - 24 JAN 2012 |
| VADM EDMUND C TAN PCG | 24 JAN 2012 - 14 DEC 2012 |
| RADM LUIS M TUASON JR PCG | 16 JUL 2012 - 14 DEC 2012 (OIC) |
| ADM RODOLFO D ISORENA PCG | 14 DEC 2012 - 26 OCT 2015 |
| RADM WILLIAM M MELAD PCG |
18 JAN 2015 - 20 DEC 2016 |
| COMMO JOEL S GARCIA PCG, PhD, HD, Al-Haj | 21 DEC 2016 - 15 JAN 2018 (OIC) |
| ADM ELSON E HERMOGINO PCG | 15 JAN 2018 - 23 OCT 2019 |
| ADM JOEL S GARCIA PCG, PhD, HD, Al-Haj | 24 OCT 2019 - 01 JUNE 2020 |
| CG ADM GEORGE V URSABIA JR | 01 JUNE 2020 - 08 SEPT 2021 |
| CG ADM LEOPOLDO V LAROYA | 08 SEPT 2021 - 10 FEB 2022 |
| CG VADM EDUARDO D FABRICANTE | 10 FEB 2022 - 01 MAR 2022 (OIC) |
| CG ADM ARTEMIO M ABU | 01 MAR 2022 - 19 OCT 2023 |
| ADM RONNIE GIL L GAVAN PCG | 20 OCT 2023 - PRESENT |